It is very easy to compute the code coverage of the Unit tests using MbUnit and NCover.
NCover.Console.exe /c "MbUnit.Cons.exe" "MyTestAssembly.dll" /a "TheAssemblyToComputeTheCoverageOn"
where MyTestAssembly.dll is the unit test assembly, TheAssemblyToComputeTheCoverageOn is the name of the assembly to compute the code coverage on (without the .dll extension)
That' it.
You can launch multiple test assembly by providing multiple assembly names. And you can monitor multiple assembly, by providing a ;-separated list of assemblies.
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Disclaimer The opinions expressed herein are my own personal opinions and do not represent my employer's view in anyway.